Below are links to the data used in the development of PolyPhred version 5, as described in:

Stephens et al. (2006), Automating Sequence-Based Detection and Genotyping of Single Nucleotide Polymorphisms (SNPs) from Diploid Samples.
Nat Genet. 2006 Mar;38(3):375-81. Epub 2006 Feb 19.

For each gene are links to the following:

trace files	a tar file containing all of the trace files
genotypes	a list of the manually-confirmed SNPs and individual genotypes in prettybase format, in which each line consists of four tab-delimited fields: <reference sequence position>    <sample ID>    <allele1>    <allele2>.
Genbank	gene information

ABP1 trace files genotypes Genbank	ACTB trace files genotypes Genbank	ALAD trace files genotypes Genbank	BIRC3 trace files genotypes Genbank	BNIP2 trace files genotypes Genbank
CD28 trace files genotypes Genbank	CD72 trace files genotypes Genbank	CTNND1 trace files genotypes Genbank	CYP2J2 trace files genotypes Genbank	ERCC3 trace files genotypes Genbank
FASLG trace files genotypes Genbank	FGF13 trace files genotypes Genbank	GAD2 trace files genotypes Genbank	GCLC trace files genotypes Genbank	HMOX2 trace files genotypes Genbank
HPRT1 trace files genotypes Genbank	MDM4 trace files genotypes Genbank	MMP2 trace files genotypes Genbank	MRE11A trace files genotypes Genbank	MSH3 trace files genotypes Genbank
ODC1 trace files genotypes Genbank	RAD21 trace files genotypes Genbank	RPA4 trace files genotypes Genbank	TNFRSF1B trace files genotypes Genbank	TNFSF13B trace files genotypes Genbank
TP53 trace files genotypes Genbank